BIOINFORMATICS TOOLS

Quality Tools

FinchTV

Chromatogram Quality Check
Guidance 2

Alignment Confidence

Alignment Tools

MULTALIN

Multiple Sequence Alignment
MAFFT

Scalable Fast Alignment
MUSCLE

Fast Multiple Sequence Alignment Tool

NCBI BLAST

BLAST

Basic Local Alignment Search Tool

Phylogenetic Analysis

MEGA 11

Phylogenetic Tree Construction
iTOL

Phylogenetic Tree Visualization

Genetic Polymorphism & Population Structure Analysis

DNAsp

Genetic Diversity & Polymorphism
UGENE

Sequence & Structure Analysis
Python

Custom Scripts for Analysis

The toolkit presented above was implemented in 2025 during the establishment of the Hacettepe University FoodOmics Laboratory Culture Collection (HUFCC).